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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ACSL1, acyl-CoA synthetase long-chain family member 1
Sequence ID:NM_001995
Entrez Gene ID:2180
Ensembl ID:ENSG00000151726

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 185676754 - 185687856

 Exon Info From UCSC:
NM_001995

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5267238Full LengthBC050073acyl-CoA synthetase long-chain family member 1
4607371IncompleteBC026290acyl-CoA synthetase long-chain family member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001986  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001995 NP_001986 P33121 EC 6.2.1.3 AMP-binding

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L09229 AAB00959 P33121 EC 6.2.1.3
BC026290 AAH26290 P33121 EC 6.2.1.3
BC050073 AAH50073 P33121 EC 6.2.1.3
DQ083028 AAZ30711 Q108N2  
DQ083029 AAZ30712 Q108N1  
D10040 BAA00931 P33121 EC 6.2.1.3
AK096117 BAC04704 P33121 EC 6.2.1.3
AK292798 BAF85487 A8K9T3  
AK303486 BAG64522 B4E0R0  
AK296550 BAH12385 B7Z3Z9  
AK296826 BAH12438 B7Z452  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ACSL1 NP_001986 R.norvegicus Acsl1 25288   NP_036952 86
M.musculus Acsl1 14081 Gene Info NP_032007 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)