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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LUM, lumican
Sequence ID:NM_002345
Entrez Gene ID:4060
Ensembl ID:ENSG00000139329

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q21.3-q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 91497347 - 91505227

NM_002345 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
28659149723291498095
86617489150189491502776
174921169150517491505541

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3950745Full LengthBC007038lumican
4688606Full LengthBC035997lumican

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002336  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002345 NP_002336 P51884 LRR_1
LRRNT

Related Sequences

 
mRNAGenPeptSwissProt
U18728 AAA85268 P51884
U21128 AAA91639 P51884
BC007038 AAH07038 P51884
BC035997 AAH35997 P51884
BT006707 AAP35353 P51884
DQ892554 ABM83480  
DQ895765 ABM86691  
AK223177 BAD96897 Q53FV4
AK312682 BAG35562 P51884

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LUM NP_002336 M.musculus Lum 17022 Gene Info NP_032550 87
R.norvegicus Lum 81682   NP_112312 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta