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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL23, ribosomal protein L23
Sequence ID:NM_000978
Entrez Gene ID:9349
Ensembl ID:ENSG00000125691

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q

Chromosomal Position (from UCSC)

Chromosomal Position:17: 37006340 - 37009989

NM_000978 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
181643700632037006466
1652783700661437006727
2794073700885637008984
4084913700927437009357
4925943700995037010052

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3632936Full LengthBC010114ribosomal protein L23
4094608Full LengthBC062716ribosomal protein L23
4453062Full LengthBC106061ribosomal protein L23
6736195Full LengthBC104651ribosomal protein L23
3606198IncompleteBC003518ribosomal protein L23

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000969  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000978 NP_000969 P62829 Ribosomal_L14

Related Sequences

 
mRNAGenPeptSwissProt
BC003518 AAH03518 Q9BTQ7
BC010114 AAH10114 P62829
BC062716 AAH62716 P62829
BC104651 AAI04652 P62829
BC106061 AAI06062 P62829
DQ893218 ABM84144  
DQ896547 ABM87546  
X52839 CAA37023 P62829
X55954 CAA39417 P62829

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL23 NP_000969 M.musculus Rpl23 65019 Gene Info NP_075029 100
R.norvegicus Rpl23 29282   NP_001007600 100
A.gambiae AgaP_AGAP010252 1279676   XP_319443 91
D.melanogaster RpL23 37628   NP_523813 89
C.elegans rpl-23 175796   NP_498231 86
A.thaliana emb2171 819595   NP_187090 85
A.thaliana AT1G04480 839511   NP_563707 85
A.thaliana AT2G33370 817900   NP_180895 85
S.cerevisiae RPL23B 856853   NP_011042 80
S.cerevisiae RPL23A 852191   NP_009466 80
S.pombe rpl2301 2543453   NP_594075 79
S.pombe rpl2302 2539286   NP_588139 79
N.crassa NCU02905 3881767   XP_965587 78
P.falciparum PF13_0171 814141   XP_001350050 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)