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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KRT18, keratin 18
Sequence ID:NM_000224
NM_199187
RefSeqGene ID:NG_008351
Entrez Gene ID:3875
Ensembl ID:ENSG00000111057

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CIRRHOSIS, NONCRYPTOGENICKRT8
KRT8
KRT8

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 53342903 - 53346684

 Exon Info From UCSC:
NM_000224
NM_199187

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2984862Full LengthBC000180keratin 18
3349315Full LengthBC000698keratin 18
3463780Full LengthBC008636keratin 18
3631540Full LengthBC004253keratin 18
3850724Full LengthBC020982keratin 18
6251574Full LengthBC072017keratin 18
3835032IncompleteBC009754keratin 18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_954657  NP_000215  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000224 NP_000215 P05783 Filament
NM_199187 NP_954657 P05783 Filament

Related Sequences

 
mRNAGenPeptSwissProt
L32537 AAA73889 Q15899
BC000180 AAH00180 P05783
BC000698 AAH00698 P05783
BC004253 AAH04253 P05783
BC008636 AAH08636 P05783
BC009754 AAH09754 I6L965
BC020982 AAH20982 P05783
BC072017 AAH72017 P05783
BT019412 AAV38219 P05783
AY762101 AAX07828 P05783
DQ893715 ABM84641  
DQ890555 ABM92172  
AK223093 BAD96813 P05783
AK313988 BAG36700 B2RA03
X12876 CAA31369 P05783
X12881 CAA31375 P05783
X12883 CAA31377 P05783

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KRT18 NP_954657 M.musculus Krt18 16668 Gene Info NP_034794 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)