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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CTHRC1, collagen triple helix repeat containing 1
Sequence ID:NM_001256099
NM_138455
RefSeqGene ID:NG_031985
Entrez Gene ID:115908
Ensembl ID:ENSG00000164932

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BARRETTESOPHAGUS/ESOPHAGEAL ADENOCARCINOMAASCC1
MSR1

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 104384660 - 104395217

Transcript StartTranscript EndChromosomal Start Chromosomal End
1249104383785104384033
250471104387965104388186
472688104390254104390470
6891218104394685104395214

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4586039Full LengthBC014245collagen triple helix repeat containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_612464  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256099 NP_001243028    
NM_138455 NP_612464 Q96CG8 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC014245 AAH14245 Q96CG8
AY136825 AAN15749 Q96CG8
AF395488 AAO17919 Q96CG8
AY358914 AAQ89273 Q96CG8
JF432469 ADZ15686  
AK300273 BAG62033 B4DTM1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTHRC1 NP_612464 M.musculus Cthrc1 68588 Gene Info NP_081054 95
R.norvegicus Cthrc1 282836   NP_758836 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)