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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MBD1, methyl-CpG binding domain protein 1
Sequence ID:NM_001204136
NM_001204137
NM_001204138
NM_001204139
NM_001204140
NM_001204141
NM_001204142
NM_001204143
NM_001204151
NM_002384
NM_015844
NM_015845
NM_015846
NM_015847
RefSeqGene ID:NG_029505
Entrez Gene ID:4152
Ensembl ID:ENSG00000141644

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 47793255 - 47803367

 Exon Info From UCSC:
NM_002384
NM_015844
NM_015845
NM_015846
NM_015847

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5432943Full LengthBC033242methyl-CpG binding domain protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056671  NP_056670  NP_002375  NP_056669  NP_056723  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001204136 NP_001191065    
NM_001204137 NP_001191066    
NM_001204138 NP_001191067    
NM_001204139 NP_001191068    
NM_001204140 NP_001191069    
NM_001204141 NP_001191070    
NM_001204142 NP_001191071    
NM_001204143 NP_001191072    
NM_001204151 NP_001191080    
NM_002384 NP_002375   MBD
zf-CXXC
NM_015844 NP_056669   MBD
zf-CXXC
NM_015845 NP_056670   MBD
zf-CXXC
NM_015846 NP_056671 Q9UIS9 MBD
zf-CXXC
NM_015847 NP_056723   MBD
zf-CXXC

Related Sequences

 
mRNAGenPeptSwissProt
AF072241 AAC68870 Q9UIS9
AF078830 AAD51442 Q9UIS9
AF078831 AAD51443 Q9UIS9
AF078832 AAD51444 Q9UIS9
AF078833 AAD51445 Q9UIS9
BC033242 AAH33242 Q9UIS9
EF488685 ABP02056 Q9UIS9
AB209765 BAD93002 Q59EP6
AK291519 BAF84208 A8K654
AK295401 BAG58353 B4DI41
AK300759 BAG62425 B4DUR3
AK302004 BAG63407 Q9UIS9
Y10746 CAA71735 Q9UIS9
AJ564845 CAD92308 Q9UIS9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MBD1 NP_001191067 M.musculus Mbd1 17190 Gene Info NP_038622 70
R.norvegicus Mbd1 291439   NP_001011924 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)