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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EIF3E, Eukaryotic translation initiation factor 3, subunit E
Sequence ID:NM_001568
Entrez Gene ID:3646
Ensembl ID:ENSG00000104408

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 109214093 - 109255062

 Exon Info From UCSC:
NM_001568

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959855Full LengthBC000734eukaryotic translation initiation factor 3, subunit E
4080571Full LengthBC008419eukaryotic translation initiation factor 3, subunit E
4096434Full LengthBC016706eukaryotic translation initiation factor 3, subunit E
4132737Full LengthBC021679eukaryotic translation initiation factor 3, subunit E
4685684Full LengthBC017887eukaryotic translation initiation factor 3, subunit E
4106529IncompleteBC005944eukaryotic translation initiation factor 3, subunit 6 48kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001559  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001568 NP_001559 P60228 PCI

Related Sequences

 
mRNAGenPeptSwissProt
U62962 AAB58251 P60228
U85947 AAB88873 P60228
U54562 AAC51760 P60228
U94175 AAC51919 P60228
BC000734 AAH00734 P60228
BC008419 AAH08419 P60228
BC016706 AAH16706 P60228
BC017887 AAH17887 P60228
BC021679 AAH21679 P60228
DQ892278 ABM83204  
DQ895478 ABM86404  
AK313186 BAG36003 B2R806
AK124178 BAG54018 B3KW56
CR457029 CAG33310 Q6IAX5
CR542275 CAG47071 P60228

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EIF3E NP_001559 M.musculus Eif3e 16341 Gene Info NP_032414 100
R.norvegicus Eif3e 299872   NP_001011990 100
D.melanogaster Int6 39877   NP_477385 61
A.gambiae EIF3E_ANOGA 1270140   XP_308812 60
A.thaliana EIF3E 824896   NP_567047 56
C.elegans eif-3.E 172959   NP_492785 51
S.pombe int6 2541089   NP_595367 45
N.crassa NCU05889 3875986   XP_959880 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)