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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF3, Serine/arginine-rich splicing factor 3
Sequence ID:NM_003017
Entrez Gene ID:6428
Ensembl ID:ENSG00000112081

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 36564539 - 36569765

NM_003017 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11693656208936562257
1703773656453736564744
3785123656662536566759
5135513656892836568966
5526383656948436569570
63931433656973836572242

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3049167Full LengthBC000914splicing factor, arginine/serine-rich 3
3507371Full LengthBC069018splicing factor, arginine/serine-rich 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003008  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003017 NP_003008 P84103 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
L10838 AAA36648 P84103
AF107405 AAD44523 P84103
BC000914 AAH00914 P84103
BC069018 AAH69018 P84103
BT007017 AAP35663 P84103
AK312553 BAG35450 B2R6F3
AK304097 BAG65003 B4E241
AB451229 BAG70043 B2R6F3
AB451352 BAG70166 B2R6F3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF3 NP_003008 M.musculus Srsf3 20383 Gene Info NP_038691 100
R.norvegicus Srsf3 361814   NP_001041372 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)