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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCB5, ATP-binding cassette, sub-family B (MDR/TAP), member 5
Sequence ID:NM_001163941
NM_001163942
NM_001163993
NM_178559
Entrez Gene ID:340273
Ensembl ID:ENSG00000004846

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7p21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 20655244 - 20796418

 Exon Info From UCSC:
NM_001163941
NM_001163942
NM_001163993
NM_178559

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8143897Full LengthBC104894ATP-binding cassette, sub-family B (MDR/TAP), member 5
8143923Full LengthBC104920ATP-binding cassette, sub-family B (MDR/TAP), member 5
5764845IncompleteBC044248ATP-binding cassette, sub-family B (MDR/TAP), member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848654  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163941 NP_001157413    
NM_001163942 NP_001157414    
NM_001163993 NP_001157465    
NM_178559 NP_848654 Q2M3G0 ABC_tran
ABC_membrane

Related Sequences

 
mRNAGenPeptSwissProt
BC104894 AAI04895 Q2M3G0
BC104920 AAI04921 Q2M3G0
AY090613 AAM09027 Q2M3G0
AF319622 AAN76500 Q2M3G0
AY234788 AAO73470 Q2M3G0
AY230001 AAP55848 A7BKA4
AF399931 AAQ03033 Q2M3G0
AY851364 AAW31629 Q2M3G0
AY851365 AAW31630 Q2M3G0
AY785909 AAX11382 A0ASV4
GU437216 ADV32636 Q2M3G0
GU437217 ADV32637 F8QQP9
AB353947 BAF75364 A7BKA4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCB5 NP_001157413 M.musculus Abcb5 77706 Gene Info NP_084237 78
R.norvegicus Abcb5 314537   XP_234725 78
A.thaliana PGP13 839687   NP_174115 39
A.thaliana PGP14 839694   NP_174122 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)