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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. FARP1, FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
Sequence ID:NM_001001715
NM_005766
Entrez Gene ID:10160
Ensembl ID:ENSG00000152767

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q32.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 98795721 - 99100827

 Exon Info From UCSC:
NM_001001715
NM_005766

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5443230Full LengthBC041595FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
30342239Full LengthBC071592FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
5727055IncompleteBC053593FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005757  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001715 NP_001001715    
NM_005766 NP_005757 Q9Y4F1 PH
Band_41
RhoGEF

Related Sequences

 
mRNAGenPeptSwissProt
BC041595 AAH41595 Q9Y4F1
BC071592 AAH71592 Q9Y4F1
AB008430 BAA24267 Q9Y4F1
AM393180 CAL38058  
AM393217 CAL38095  
AM393453 CAL38331  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens FARP1 NP_005757 R.norvegicus Farp1 306183   NP_001100757 93
M.musculus Farp1 223254 Gene Info NP_598843 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)