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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COX5A, cytochrome c oxidase subunit Va
Sequence ID:NM_004255
Entrez Gene ID:9377
Ensembl ID:ENSG00000178741

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 75212616 - 75230385

NM_004255 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
181827521261875212782
1833057521598875216110
3064277521910675219227
4285447522145675221572
5457847523025575230494

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4815806Full LengthBC024240cytochrome c oxidase subunit Va

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004246  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004255 NP_004246 P20674 COX5A

Related Sequences

 
mRNAGenPeptSwissProt
M22760 AAA99220 P20674
BC024240 AAH24240 P20674
DQ987236 ABK92283 P20674
DQ987237 ABK92284 P20674
DQ893584 ABM84510  
DQ896832 ABM87831  
CR407649 CAG28577 P20674

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COX5A NP_004246 M.musculus Cox5a 12858 Gene Info NP_031773 88
R.norvegicus Cox5a 252934   NP_665726 87
A.gambiae AgaP_AGAP011159 1270770   XP_309490 65
D.melanogaster CoVa 41432   NP_477217 54
C.elegans cco-2 176707   NP_499681 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)