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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RSL1D1, ribosomal L1 domain containing 1
Sequence ID:NM_015659
Entrez Gene ID:26156
Ensembl ID:ENSG00000171490

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 11928056 - 11928703

NM_015659 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
339181192805411931969
391942091193355111933841
421043351193555111935676
433644291193576311935856
443045311194035711940458
453246801194055111940699
468148191194152411941662
482049591194413511944274
496051371194526411945441

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322751Full LengthBC113699ribosomal L1 domain containing 1
8327696Full LengthBC112228ribosomal L1 domain containing 1
4107571IncompleteBC016362ribosomal L1 domain containing 1
4251450IncompleteBC017899ribosomal L1 domain containing 1
5015644IncompleteBC019069ribosomal L1 domain containing 1
6107844IncompleteBC070325ribosomal L1 domain containing 1
6673395IncompleteBC107782ribosomal L1 domain containing 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015659 NP_056474 O76021  

Related Sequences

 
mRNAGenPeptSwissProt
AF083127 AAF98239 O76021
BC016362 AAH16362 A0PJ61
BC017899 AAH17899 A0PJ87
BC019069 AAH19069 O76021
BC107782 AAI07783 Q32Q62
BC112228 AAI12229 O76021
BC113699 AAI13700 O76021
AY154473 AAN46298 O76021
AY598331 AAT06742 O76021
HQ258262 ADR83016  
HQ258426 ADR83180  
AK295935 BAG58720 B4DJ58
AJ007398 CAA07491 O76021
AL049999 CAB43231 O76021

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RSL1D1 NP_056474 M.musculus Rsl1d1 66409 Gene Info NP_079822 60
A.thaliana AT3G58660 825035   NP_191425 34
S.pombe SPAC8F11.04 2543438   NP_593953 32
N.crassa NCU11321 5847365   XP_001728192 32
A.thaliana AT2G42650 818865   NP_181793 30
A.thaliana AT1G06380 837149   NP_172126 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)