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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PUSL1, pseudouridylate synthase-like 1
Sequence ID:NM_153339
Entrez Gene ID:126789
Ensembl ID:ENSG00000169972

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 1244614 - 1247056

NM_153339 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
110712439931244099
10816512442941244351
16635312444651244652
35450312448331244982
50467412450601245230
67572912460131246067
73089212462881246450
893123912467091247055

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4778177Full LengthBC034304pseudouridylate synthase-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_699170  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_153339 NP_699170 Q8N0Z8 PseudoU_synth_1

Related Sequences

 
mRNAGenPeptSwissProt
BC034304 AAH34304 Q8N0Z8
HQ447403 ADQ31889  
AK075292 BAC11527 Q8N0Z8
AK298218 BAG60488 Q8N0Z8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PUSL1 NP_699170 R.norvegicus Pusl1 362681   NP_001102169 86
M.musculus Pusl1 433813 Gene Info NP_001028662 80
A.thaliana AT1G09800 837510   NP_172451 42
A.gambiae AgaP_AGAP009903 1279317   XP_319023 36
D.melanogaster CG34140 4379908   NP_001036574 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)