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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL30, ribosomal protein L30
Sequence ID:NM_000989
Entrez Gene ID:6156
Ensembl ID:ENSG00000156482

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 99053953 - 99056349

NM_000989 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
211569905394299054077
1572879905487299055002
2884339905717099057315
4344869905757499057626
4875249905773599057772

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5393199Full LengthBC032700ribosomal protein L30
30792764Full LengthBC095426ribosomal protein L30

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000980  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000989 NP_000980 P62888 Ribosomal_L7Ae

Related Sequences

 
mRNAGenPeptSwissProt
L05095 AAC15858 P62888
BC032700 AAH32700 P62888
BC095426 AAH95426 P62888
D28438 BAA05804  
AK312102 BAG35038 P62888
X79238 CAA55820 P62888

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL30 NP_000980 M.musculus Rpl30 19946 Gene Info NP_001156957 100
A.gambiae AgaP_AGAP003816 1271556   XP_310377 82
D.melanogaster RpL30 44059   NP_724149 81
A.thaliana AT1G77940 844129   NP_565164 72
A.thaliana AT1G36240 840530   NP_174853 72
C.elegans rpl-30 172921   NP_492728 72
A.thaliana AT3G18740 821405   NP_188504 70
S.pombe rpl3002 2542661   NP_594857 70
S.pombe rpl3001 2542848   NP_593558 68
N.crassa NCU08963 3876935   XP_960785 62
P.falciparum PF10_0187 810345   XP_001347472 62
S.cerevisiae RPL30 852853   NP_011485 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)