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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC13A5, solute carrier family 13 (sodium-dependent citrate transporter), member 5
Sequence ID:NM_001143838
NM_177550
Entrez Gene ID:284111
Ensembl ID:ENSG00000141485

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 6590851 - 6616652

 Exon Info From UCSC:
NM_001143838
NM_177550

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8143798Full LengthBC104795solute carrier family 13 (sodium-dependent citrate transporter), member 5
8327619Full LengthBC112151solute carrier family 13 (sodium-dependent citrate transporter), member 5
9052203Full LengthBC143689solute carrier family 13 (sodium-dependent citrate transporter), member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_808218  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143838 NP_001137310    
NM_177550 NP_808218 Q86YT5 Na_sulph_symp

Related Sequences

 
mRNAGenPeptSwissProt
BC104795 AAI04796 Q86YT5
BC112151 AAI12152 Q86YT5
BC143689 AAI43690 Q86YT5
AY151833 AAN86530 Q86YT5
AK172779 BAD18760 Q6ZMG6
AK172785 BAD18766 Q86YT5
AK127797 BAG54572 B3KXR0
AK297612 BAH12628 B7Z4P2
AJ489980 CAD34590 Q8IV67
CR749584 CAH18382 Q68D44

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC13A5 NP_808218 R.norvegicus Slc13a5 266998   NP_733768 78
M.musculus Slc13a5 237831 Gene Info NP_001004148 75
C.elegans nac-1 181585   NP_510473 43
C.elegans nac-3 176429   NP_001022673 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)