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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. RPS16, ribosomal protein S16
Sequence ID:NM_001020
Entrez Gene ID:6217
Ensembl ID:ENSG00000105193

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39923862 - 39926588

NM_001020 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3628799Full LengthBC004324ribosomal protein S16
4310307Full LengthBC007977ribosomal protein S16
5394209Full LengthBC071674ribosomal protein S16
30710507IncompleteBC095429ribosomal protein S16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001011  

Protein Infomation

NM_001020 NP_001011 P62249 Ribosomal_S9

Related Sequences

M60854 AAA60583 P62249
BC004324 AAH04324 P62249
BC007977 AAH07977 P62249
BC071674 AAH71674 Q6IPX4
DQ893449 ABM84375  
DQ896219 ABM87218  
D28392 BAA05758  
AK315498 BAG37882 P62249

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens RPS16 NP_001011 M.musculus Rps16 20055 Gene Info NP_038675 100
R.norvegicus Rps16 140655   XP_341816 100
D.melanogaster RpS16 37580   NP_611685 89
A.gambiae AgaP_AGAP011424 1278269   XP_317881 82
C.elegans rps-16 179998   NP_506690 77
A.thaliana AT5G18380 831956   NP_197339 74
A.thaliana AT3G04230 819578   NP_187073 73
A.thaliana AT2G09990 815456   NP_178826 73
S.pombe rps1601 2540812   NP_595738 72
S.pombe rps1602 2543559   NP_593452 72
N.crassa NCU08620 3880988   XP_964828 69
S.cerevisiae RPS16A 855174   NP_013863 66
S.cerevisiae RPS16B 851476   NP_010200 66
P.falciparum PF08_0076 2655275   XP_001349386 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)