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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDC42EP4, CDC42 effector protein (Rho GTPase binding) 4
Sequence ID:NM_012121
Entrez Gene ID:23580
Ensembl ID:ENSG00000179604

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q24-q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 71279762 - 71307054

NM_012121 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2230097127976371282750
301031217130803171308142

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3617435Full LengthBC002774CDC42 effector protein (Rho GTPase binding) 4
4181539Full LengthBC010451CDC42 effector protein (Rho GTPase binding) 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036253  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012121 NP_036253 Q9H3Q1 PBD

Related Sequences

 
mRNAGenPeptSwissProt
AF099664 AAD16299 Q9H3Q1
BC002774 AAH02774 Q9H3Q1
BC010451 AAH10451 Q9H3Q1
HQ447559 ADQ32045  
AB042237 BAB17272 Q9H3Q1
AK312536 BAG35435 B2R6D8
AK027385 BAG51313 B2R6D8
AK097835 BAG53539 B3KUS7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDC42EP4 NP_036253 M.musculus Cdc42ep4 56699 Gene Info NP_001156818 82
R.norvegicus Cdc42ep4 303653   NP_001100533 81
R.norvegicus LOC689752 689752   XP_001071881 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)