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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL11A2, collagen, type XI, alpha 2
Sequence ID:NM_001163771
NM_080679
NM_080680
NM_080681
RefSeqGene ID:NG_011589
Entrez Gene ID:1302
Ensembl ID:ENSG00000204248

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
DEAFNESS, AUTOSOMAL DOMINANT 13 
DEAFNESS, AUTOSOMAL RECESSIVE 53 
FIBROCHONDROGENESIS 2 
OTOSPONDYLOMEGAEPIPHYSEAL DYSPLASIACOL2A1
STICKLER SYNDROME, TYPE III 
WEISSENBACHER-ZWEYMULLER SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 33130471 - 33145670

 Exon Info From UCSC:
NM_001163771
NM_080679
NM_080680
NM_080681

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542411  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163771 NP_001157243    
NM_080679 NP_542410    
NM_080680 NP_542411   Collagen
COLFI
Laminin_G_2
NM_080681 NP_542412    

Related Sequences

 
mRNAGenPeptSwissProt
L18987 AAA35498 P13942
J04974 AAA52034 P13942
BC053886 AAH53886 P13942
AK130938 BAC85467 Q6ZNN4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL11A2 NP_542411 M.musculus Col11a2 12815 Gene Info NP_034056 94
R.norvegicus Col11a2 294279   NP_997693 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)