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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARFRP1, ADP-ribosylation factor related protein 1
Sequence ID:NM_001134758
NM_001267544
NM_001267545
NM_001267546
NM_001267547
NM_001267548
NM_001267549
NM_003224
NR_051954
NR_051955
NR_051956
NR_051957
NR_051958
Entrez Gene ID:10139
Ensembl ID:ENSG00000101246

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 62330002 - 62339010

 Exon Info From UCSC:
NM_001134758
NM_003224

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939812Full LengthBC093967ADP-ribosylation factor related protein 1
9051955Full LengthBC143447ADP-ribosylation factor related protein 1
9051956Full LengthBC143448ADP-ribosylation factor related protein 1
9051975Full LengthBC143467ADP-ribosylation factor related protein 1
30531333Full LengthBC092480ADP-ribosylation factor related protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003215  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001134758 NP_001128230    
NM_001267544 NP_001254473    
NM_001267545 NP_001254474    
NM_001267546 NP_001254475    
NM_001267547 NP_001254476    
NM_001267548 NP_001254477    
NM_001267549 NP_001254478    
NM_003224 NP_003215 Q13795 Arf

Related Sequences

 
mRNAGenPeptSwissProt
BC092480 AAH92480 Q13795
BC093967 AAH93967 Q13795
BC143447 AAI43448 Q13795
BC143448 AAI43449 Q13795
BC143467 AAI43468 B7ZKY8
BT019624 AAV38430 Q13795
BT019663 AAV38469 Q13795
AK095962 BAG53176 B3KTR4
X91504 CAA62804 Q13795
CR456752 CAG33033 Q13795

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARFRP1 NP_003215 M.musculus Arfrp1 76688 Gene Info NP_001159463 97
R.norvegicus Arfrp1 117051   NP_446432 97
D.melanogaster CG7039 31841   NP_572526 64
A.gambiae AgaP_AGAP004586 1275947   XP_315241 63
S.cerevisiae ARL3 856056   NP_015274 49
A.thaliana GB1 835297   NP_200034 46
N.crassa NCU00333 3873974   XP_957804 44
C.elegans Y54E10BR.2 171878   NP_491094 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)