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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP6V0C, ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
Sequence ID:NM_001198569
NM_001694
Entrez Gene ID:527
Ensembl ID:ENSG00000185883

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 2563986 - 2570219

Transcript StartTranscript EndChromosomal Start Chromosomal End
123125639522564182
23241525692182569401
416109225695412570217

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3618755Full LengthBC004537ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
3831016Full LengthBC007389ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
4111426Full LengthBC009290ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
4127653Full LengthBC007759ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001685  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001198569 NP_001185498    
NM_001694 NP_001685 P27449 ATP-synt_C

Related Sequences

 
mRNAGenPeptSwissProt
M62762 AAA60039 P27449
BC004537 AAH04537 P27449
BC007389 AAH07389 P27449
BC007759 AAH07759 P27449
BC009290 AAH09290 P27449
BT007155 AAP35819 P27449
JF432559 ADZ15776  
JF432578 ADZ15795  
CR541930 CAG46728 P27449
CR541951 CAG46749 P27449

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP6V0C NP_001185498 R.norvegicus Atp6v0c 170667   NP_570836 91
M.musculus Atp6v0c 11984 Gene Info NP_033859 91
D.melanogaster Vha16 44307   NP_476801 82
S.pombe vma3 2542471   NP_594799 76
N.crassa NCU01332 3877578   XP_961418 75
S.cerevisiae VMA3 856686   NP_010887 72
C.elegans vha-1 176383   NP_499165 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)