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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. YY1, YY1 transcription factor
Sequence ID:NM_003403
Entrez Gene ID:7528
Ensembl ID:ENSG00000100811

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q

Chromosomal Position (from UCSC)

Chromosomal Position:14: 100744714 - 100745344

NM_003403 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11159100705101100706259
11601322100728640100728802
13231383100741034100741094
13841542100742826100742984
15432592100743754100744803

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5261384Full LengthBC037308YY1 transcription factor
5815774Full LengthBC065366YY1 transcription factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003394  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003403 NP_003394 P25490 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
M77698 AAA59467 P25490
M76541 AAA59926 P25490
BC037308 AAH37308 P25490
BC065366 AAH65366 P25490
DQ891638 ABM82564  
EU176600 ABW03401  
Z14077 CAA78455 P25490

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens YY1 NP_003394 M.musculus Yy1 22632 Gene Info NP_033563 100
R.norvegicus Yy1 24919   NP_775412 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta