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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RFX4, regulatory factor X, 4 (influences HLA class II expression)
Sequence ID:NM_001206691
NM_032491
NM_213594
NM_002920
Entrez Gene ID:5992
Ensembl ID:ENSG00000111783

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 106994949 - 107127284

 Exon Info From UCSC:
NM_032491
NM_213594
NM_002920

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4825079Full LengthBC030644regulatory factor X, 4 (influences HLA class II expression)
4836964Full LengthBC028582regulatory factor X, 4 (influences HLA class II expression)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_998759  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001206691 NP_001193620    
NM_032491 NP_115880    
NM_213594 NP_998759 Q33E94 RFX_DNA_binding

Related Sequences

 
mRNAGenPeptSwissProt
BC028582 AAH28582 Q33E94
BC030644 AAH30644 Q33E94
AF332192 AAK17191 Q33E94
AY102009 AAM52484 Q33E94
DQ890831 ABM81757  
DQ893986 ABM84912  
AB044245 BAB59001 Q33E94
AK074913 BAC11288 Q33E94
AB095365 BAE48231 Q33E94
AB095366 BAE48232 Q33E94
AB195784 BAE48237 Q33E94
AB195785 BAE48238 Q33E94
AK291445 BAF84134 Q33E94
AK315698 BAG38061 Q33E94
AK302837 BAG64029 B4DZB7
AL833921 CAD38777 Q33E94

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RFX4 NP_001193620 M.musculus Rfx4 71137 Gene Info NP_001020089 97
R.norvegicus Rfx4 500818   XP_576205 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)