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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PNPT1, polyribonucleotide nucleotidyltransferase 1
Sequence ID:NM_033109
Entrez Gene ID:87178
Ensembl ID:ENSG00000138035

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 13 
DEAFNESS, AUTOSOMAL RECESSIVE 70 

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 55863125 - 55920976

 Exon Info From UCSC:
NM_033109

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6062060Full LengthBC053660polyribonucleotide nucleotidyltransferase 1
3459656IncompleteBC000862polyribonucleotide nucleotidyltransferase 1
3685398IncompleteBC005986polyribonucleotide nucleotidyltransferase 1
3930835IncompleteBC021170polyribonucleotide nucleotidyltransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_149100  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_033109 NP_149100 Q8TCS8 EC 2.7.7.8 KH_1
RNase_PH
RNase_PH_C
PNPase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC000862 AAH00862 Q8TCS8 EC 2.7.7.8
BC005986 AAH05986 Q8TCS8 EC 2.7.7.8
BC053660 AAH53660 Q8TCS8 EC 2.7.7.8
AY027528 AAK13047 Q8TCS8 EC 2.7.7.8
AY290863 AAP44472 Q8TCS8 EC 2.7.7.8
AJ458465 CAD30289 Q8TCS8 EC 2.7.7.8
CR749867 CAH18709 Q8TCS8 EC 2.7.7.8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PNPT1 NP_149100 R.norvegicus Pnpt1 360992   NP_001135843 92
M.musculus Pnpt1 71701 Gene Info NP_082145 91
A.gambiae AgaP_AGAP010791 1278871   XP_318517 58
D.melanogaster CG11337 43710   NP_001163783 57
C.elegans BE0003N10.1 175269   NP_497324 44
A.thaliana AT5G14580 831309   NP_196962 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)