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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMD1, proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Sequence ID:NM_001191037
Entrez Gene ID:5707
Ensembl ID:ENSG00000173692

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 231921580 - 232029949

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4826340Full LengthBC094720proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
40008444Full LengthBC114434proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
40008454Full LengthBC112344proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
3504722IncompleteBC001053proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
3956428IncompleteBC014013proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
4445650IncompleteBC047897proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
5087823IncompleteBC020223proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
5104012IncompleteBC073833proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
5111606IncompleteBC032445proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
5530252IncompleteBC064398proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
5553838IncompleteBC039845proteasome (prosome, macropain) 26S subunit, non-ATPase, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002798  

Protein Infomation

NM_001191037 NP_001177966    
NM_002807 NP_002798 Q99460 PC_rep

Related Sequences

BC001053 AAH01053 Q99460
BC014013 AAH14013 Q99460
BC020223 AAH20223 Q05CW6
BC032445 AAH32445 Q05BX4
BC039845 AAH39845 Q99460
BC047897 AAH47897 Q99460
BC064398 AAH64398 Q99460
BC073833 AAH73833 Q99460
BC094720 AAH94720 Q99460
BC112344 AAI12345 Q99460
BC114434 AAI14435 Q99460
D44466 BAA07918 Q99460
AK312528 BAG35427 B2R6D0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens PSMD1 NP_002798 R.norvegicus Psmd1 83806   NP_114184 99
M.musculus Psmd1 70247 Gene Info NP_081633 99
A.gambiae AgaP_AGAP001745 1281429   XP_321340 67
D.melanogaster Rpn2 43449   NP_651677 67
A.thaliana AT1G04810 839409   NP_171973 52
A.thaliana AT2G32730 817833   NP_180832 52
N.crassa NCU09450 3874183   XP_958036 49
S.pombe rpn2 2540191   NP_596381 47
S.cerevisiae RPN2 854735   NP_012190 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)