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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RXRB, retinoid X receptor, beta
Sequence ID:NM_001270401
NM_021976
RefSeqGene ID:NG_023374
Entrez Gene ID:6257
Ensembl ID:ENSG00000204231

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 33162381 - 33168391

Transcript StartTranscript EndChromosomal Start Chromosomal End
1912593316136533162605
126013653316272133162826
136614573316313933163230
145815903316334633163478
159117203316368333163812
172118933316421033164382
189420733316553833165717
207422303316608433166240
223124783316694533167192
247928923316801833168431

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502936Full LengthBC001167retinoid X receptor, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068811  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270401 NP_001257330    
NM_021976 NP_068811 Q5STP9
P28702
Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
M84820 AAA60293 P28702
BC001167 AAH01167 Q5STP9
P28702
BT007280 AAP35944 Q5STP9
P28702
HQ692844 ADZ17355 Q5STP9
HQ709179 ADZ17386 Q5STQ1
AB209244 BAD92481 Q59G65
AK295759 BAH12180 B7Z3E4
AK300402 BAH13278 B7Z6J2
AK301096 BAH13409 B7Z6X3
AK302125 BAH13631 B7Z7J5
X63522 CAA45087 Q5STP9
P28702
X65463 CAA46456 Q06310

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RXRB NP_068811 R.norvegicus Rxrb 361801   NP_996731 98
M.musculus Rxrb 20182 Gene Info NP_035436 97
D.melanogaster usp 31165   NP_476781 58
A.gambiae AgaP_AGAP002095 1281377   XP_320944 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)