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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PABPC1, poly(A) binding protein, cytoplasmic 1
Sequence ID:NM_002568
RefSeqGene ID:NG_027520
Entrez Gene ID:26986
Ensembl ID:ENSG00000070756

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22.2-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 101727579 - 101729920

 Exon Info From UCSC:
NM_002568

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3940309Full LengthBC015958poly(A) binding protein, cytoplasmic 1
4123269Full LengthBC023520poly(A) binding protein, cytoplasmic 1
5271298IncompleteBC041863poly(A) binding protein, cytoplasmic 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002559  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002568 NP_002559 P11940 RRM_1
PABP

Related Sequences

 
mRNAGenPeptSwissProt
BC015958 AAH15958 P11940
BC023520 AAH23520 P11940
DQ893508 ABM84434  
DQ896500 ABM87499  
AK095194 BAG53005 B3KT93
AK298990 BAG61082 B4DQX0
AK303120 BAG64226 B4DZW4
Y00345 CAA68428 P11940
Z48501 CAA88401 P11940

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PABPC1 NP_002559 M.musculus Pabpc1 18458 Gene Info NP_032800 100
R.norvegicus Pabpc1 171350   NP_599180 100
S.cerevisiae PAB1 856912   NP_011092 57
S.pombe pabp 2541505   NP_593377 57
P.falciparum PFL1170w 811286   XP_001350640 54
A.thaliana PAB8 841399   NP_001185184 52
A.thaliana PAB2 829557   NP_195137 51
N.crassa NCU04799 3876563   XP_960425 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta