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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNTN6, contactin 6
Sequence ID:NM_014461
Entrez Gene ID:27255
Ensembl ID:ENSG00000134115

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p26-p25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 1134628 - 1445278

 Exon Info From UCSC:
NM_014461

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40036214Full LengthBC113118contactin 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055276  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014461 NP_055276 Q9UQ52 fn3
ig
I-set

Related Sequences

 
mRNAGenPeptSwissProt
BC113118 AAI13119 Q9UQ52
AB003592 BAA82612 Q9UQ52
AK294786 BAG57911 B4DGV0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNTN6 NP_055276 R.norvegicus Cntn6 27256   NP_037357 90
M.musculus Cntn6 53870 Gene Info NP_059079 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)