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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PPT1, Palmitoyl-protein thioesterase 1
Sequence ID:NM_000310
NM_001142604
RefSeqGene ID:NG_009192
Entrez Gene ID:5538
Ensembl ID:ENSG00000131238

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CEROID LIPOFUSCINOSIS, NEURONAL, 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 40538384 - 40562917

 Exon Info From UCSC:
NM_000310
NM_001142604

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4249991Full LengthBC008426palmitoyl-protein thioesterase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000301  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000310 NP_000301 P50897 EC 3.1.2.22 Palm_thioest
NM_001142604 NP_001136076      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U44772 AAB06236 P50897 EC 3.1.2.22
BC008426 AAH08426 P50897 EC 3.1.2.22
HQ447414 ADQ31900    
AK312287 BAG35214 P50897 EC 3.1.2.22
AK301682 BAG63155 B4DWU3  
AK302232 BAG63586 P50897 EC 3.1.2.22
CR542053 CAG46850 P50897 EC 3.1.2.22

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PPT1 NP_000301 M.musculus Ppt1 19063 Gene Info NP_032943 86
R.norvegicus Ppt1 29411   NP_071947 86
D.melanogaster Ppt1 31805   NP_727284 56
C.elegans ppt-1 191744   NP_504684 55
A.gambiae AgaP_AGAP001058 1272860   XP_311781 53
N.crassa NCU06530 3877950   XP_961802 37
A.thaliana AT3G60340 825205   NP_850728 34
S.pombe pdf1 2540904   NP_595325 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)