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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHI3L1, chitinase 3-like 1 (cartilage glycoprotein-39)
Sequence ID:NM_001276
RefSeqGene ID:NG_013056
Entrez Gene ID:1116
Ensembl ID:ENSG00000133048

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ASTHMA-RELATEDTRAITS 
SCHIZOAFFECTIVEDISORDERAKT1
APOL1
APOL2
APOL4
COMT
DAO
DAOA
DISC1
DISC2
DRD3
DTNBP1
HTR2A
LGR4
MTHFR
MTHFR
RTN4R
SYN2

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q32.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 203148058 - 203155832

NM_001276 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
31685203148058203148712
686802203148888203149004
803985203149597203149779
9861109203150289203150412
11101231203151858203151979
12321382203152768203152918
13831439203153703203153759
14401641203154311203154512
16421671203155443203155472
16721867203155726203155921

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4183798Full LengthBC039132chitinase 3-like 1 (cartilage glycoprotein-39)
4212419Full LengthBC038354chitinase 3-like 1 (cartilage glycoprotein-39)
4212748Full LengthBC008568chitinase 3-like 1 (cartilage glycoprotein-39)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001267  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001276 NP_001267 P36222 Glyco_hydro_18

Related Sequences

 
mRNAGenPeptSwissProt
M80927 AAA16074 P36222
BC008568 AAH08568 P36222
BC038354 AAH38354 P36222
BC039132 AAH39132 P36222
BT007223 AAP35887 P36222
DQ890777 ABM81703  
DQ893937 ABM84863  
EU831695 ACE86529  
EU831608 ACE87208  
AB209459 BAD92696 Q59FK1
AK312911 BAG35757 P36222
AK095458 BAG53058 B3KTE6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHI3L1 NP_001267 R.norvegicus Chi3l1 89824   NP_446012 81
M.musculus Chi3l1 12654 Gene Info NP_031721 74
N.crassa NCU04554 3872093   XP_955945 38
S.cerevisiae CTS2 851977   NP_010659 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)