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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SERPINB1, serpin peptidase inhibitor, clade B (ovalbumin), member 1
Sequence ID:NM_030666
NR_073111
NR_073112
Entrez Gene ID:1992
Ensembl ID:ENSG00000021355

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 2833733 - 2842096

NM_030666 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2153128337352834245
53269928360892836256
70084228363412836483
84396028381152838232
961109828387822838919
1099127428406522840827
1275131028420452842080

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3456154Full LengthBC009015serpin peptidase inhibitor, clade B (ovalbumin), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_109591  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030666 NP_109591 P30740 Serpin

Related Sequences

 
mRNAGenPeptSwissProt
BC009015 AAH09015 P30740
BT006928 AAP35574 P30740
AK223370 BAD97090 P30740
AK291327 BAF84016 P30740
AK298044 BAG60342 B4DNT0
AK304641 BAG65420 B4E3A8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SERPINB1 NP_109591 R.norvegicus Serpinb1a 291091   NP_001026812 82
M.musculus Serpinb1a 66222 Gene Info NP_079705 80
A.thaliana AT1G47710 841182   NP_175202 32
A.thaliana AT3G45220 823658   NP_190108 31
A.thaliana AT2G26390 817179   NP_180207 31
A.thaliana AT2G25240 817062   NP_180096 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)