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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PPIF, peptidylprolyl isomerase F
Sequence ID:NM_005729
Entrez Gene ID:10105
Ensembl ID:ENSG00000108179

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 81107226 - 81114230

NM_005729 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12808110721981107498
2813118110883181108861
3124008110942081109508
4014978111124281111338
4985738111207281112147
57421958111346281115083

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3659599Full LengthBC005020peptidylprolyl isomerase F
5215228Full LengthBC110299peptidylprolyl isomerase F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005720  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005729 NP_005720 P30405 EC 5.2.1.8 Pro_isomerase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M80254 AAA58434 P30405 EC 5.2.1.8
BC005020 AAH05020 P30405 EC 5.2.1.8
BC110299 AAI10300 Q2YDB7  
AY358854 AAQ89213 Q6UWC4  
EU831447 ACE87134    
HQ447889 ADQ32373    
AK312757 BAG35623 B2R6X6  
AK296669 BAG59266 Q2YDB7  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PPIF NP_005720 M.musculus Ppif 105675 Gene Info NP_598845 90
R.norvegicus Ppif 282819   NP_758443 90
S.pombe ppi1 2540269   NP_595664 76
A.gambiae AgaP_AGAP000462 1271778   XP_310632 72
A.thaliana CYP20-2 831151   NP_001190299 72
D.melanogaster Cyp1 32595   NP_523366 72
S.cerevisiae CPR1 851733   NP_010439 70
N.crassa NCU00726 5847832   XP_001728468 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)