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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL38, ribosomal protein L38
Sequence ID:NM_000999
NM_001035258
Entrez Gene ID:6169
Ensembl ID:ENSG00000172809

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 72199826 - 72205968

 Exon Info From UCSC:
NM_000999
NM_001035258

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3346447Full LengthBC000603ribosomal protein L38

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000990  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000999 NP_000990 P63173 Ribosomal_L38e
NM_001035258 NP_001030335 P63173  

Related Sequences

 
mRNAGenPeptSwissProt
BC000603 AAH00603 P63173
AB055771 BAB62865  
AK312119 BAG35055 P63173
Z26876 CAA81488 P63173

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL38 NP_000990 R.norvegicus LOC685963 685963   XP_001065954 100
R.norvegicus Rpl38 689284   NP_001071060 100
R.norvegicus LOC690468 690468   XP_001074532 100
M.musculus Rpl38 67671 Gene Info NP_075861 99
C.elegans rpl-38 180044   NP_506860 79
A.thaliana AT2G43460 818947   NP_181874 78
A.thaliana AT3G59540 825123   NP_191513 78
A.gambiae RL38_ANOGA 1279582   XP_319334 76
D.melanogaster RpL38 3355144   NP_001036440 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)