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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CMTM6, CKLF-like MARVEL transmembrane domain containing 6
Sequence ID:NM_017801
Entrez Gene ID:54918
Ensembl ID:ENSG00000091317

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 32524223 - 32544344

NM_017801 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1928043252280332525588
280529033252942932529527
290430803253320132533377
308133843254409932544402

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3633497Full LengthBC002797CKLF-like MARVEL transmembrane domain containing 6
3858246IncompleteBC027472CKLF-like MARVEL transmembrane domain containing 6
3948216IncompleteBC009187CKLF-like MARVEL transmembrane domain containing 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060271  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017801 NP_060271 Q9NX76 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
AF116694 AAF71114 Q9P1E2
BC002797 AAH02797 Q9NX76
AF479261 AAN73039 Q9NX76
AK000403 BAA91141 Q9NX76
CR457231 CAG33512 Q9NX76

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CMTM6 NP_060271 R.norvegicus Cmtm6 316035   NP_001007803 84
M.musculus Cmtm6 67213 Gene Info NP_080312 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)