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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATG7, Autophagy related 7
Sequence ID:NM_006395
NM_001136031
NM_001144912
Entrez Gene ID:10533
Ensembl ID:ENSG00000197548

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 11314101 - 11596557

 Exon Info From UCSC:
NM_006395
NM_001136031
NM_001144912

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504204Full LengthBC000091ATG7 autophagy related 7 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006386  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001136031 NP_001129503    
NM_001144912 NP_001138384    
NM_006395 NP_006386 O95352 ThiF

Related Sequences

 
mRNAGenPeptSwissProt
AF094516 AAC69630 O95352
BC000091 AAH00091 O95352
AK314504 BAG37104 B2RB57
AK075221 BAG52088 B3KQM6
AK298833 BAG60963 B4DQK1
AK303694 BAG64682 B4E170
AL122075 CAB59250 O95352

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG7 NP_006386 M.musculus Atg7 74244 Gene Info NP_083111 93
R.norvegicus Atg7 312647   NP_001012097 93
A.thaliana APG7 834630   NP_568652 49
N.crassa NCU06672 3877057   XP_960919 47
C.elegans atg-7 178005   NP_502064 45
S.pombe SPBC6B1.05c 2540790   NP_596084 45
D.melanogaster Atg7 37141   NP_611350 44
S.cerevisiae ATG7 856576   NP_012041 43
A.gambiae AgaP_AGAP010303 4578408   XP_318213 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)