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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLRN1, Clarin 1
Sequence ID:NM_001256819
NM_001195794
NM_174878
NM_052995
RefSeqGene ID:NG_009168
Entrez Gene ID:7401
Ensembl ID:ENSG00000163646

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
RETINITIS PIGMENTOSA 61 
USHER SYNDROME, TYPE 3A 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 150643949 - 150662023

 Exon Info From UCSC:
NM_174878
NM_052995

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30915292Full LengthBC074971clarin 1
30915510Full LengthBC074970clarin 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195794 NP_001182723    
NM_001256819 NP_001243748    
NM_052995 NP_443721 P58418  
NM_174878 NP_777367 P58418  

Related Sequences

 
mRNAGenPeptSwissProt
BC074970 AAH74970 P58418
BC074971 AAH74971 P58418
AF388366 AAL09581 P58418
AF388368 AAL09582 A4CYM0
AF495717 AAM88774 P58418
AF482697 AAN07148 P58418
HM626132 ADM63096 P58418
HM626133 ADM63097 E1ACV0
HM626134 ADM63098 E1ACV1
HM626135 ADM63099 E1ACV0
HM626136 ADM63100 E1ACV0
XM_001717355 XP_001717407  
XM_929916 XP_935009  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLRN1 NP_001182723 R.norvegicus Clrn1 261738   NP_695211 93
M.musculus Clrn1 229320 Gene Info NP_700433 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)