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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCD5, stearoyl-CoA desaturase 5
Sequence ID:NM_001037582
NM_024906
Entrez Gene ID:79966
Ensembl ID:ENSG00000145284

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 83550691 - 83719925

 Exon Info From UCSC:
NM_001037582
NM_024906

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021427Full LengthBC137429stearoyl-CoA desaturase 5
9021430Full LengthBC137432stearoyl-CoA desaturase 5
5300929IncompleteBC048971stearoyl-CoA desaturase 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079182  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001037582 NP_001032671 Q86SK9 EC 1.14.19.1  
NM_024906 NP_079182     FA_desaturase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC004936 AAH04936 Q9BSN4  
BC048971 AAH48971 Q86UC8  
BC137429 AAI37430 Q86SK9 EC 1.14.19.1
BC137432 AAI37433 Q86SK9 EC 1.14.19.1
AF389338 AAP31443 Q86SK9 EC 1.14.19.1
AK024685 BAB14961 Q86SK9 EC 1.14.19.1
AL831891 CAD38567 Q86SK9 EC 1.14.19.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCD5 NP_001032671 A.gambiae AgaP_AGAP001713 1281461   XP_321375 55
D.melanogaster desat1 117369   NP_731711 50
C.elegans fat-6 178122   NP_502255 49
C.elegans fat-7 179100   NP_504814 48
C.elegans fat-5 180162   NP_507482 46
P.falciparum PFE0555w 812825   XP_001351669 40
N.crassa NCU05259 3877972   XP_961824 40
S.pombe SPCC1281.06c 2538753   NP_588170 39
S.cerevisiae OLE1 852825   NP_011460 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)