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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS5, ribosomal protein S5
Sequence ID:NM_001009
Entrez Gene ID:6193
Ensembl ID:ENSG00000083845

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 58904422 - 58906169

NM_001009 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1715889863558898705
721805889950358899611
1813905890434258904551
3915195890472558904853
5206185890586358905961
6197405890604858906169

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3856663Full LengthBC018151ribosomal protein S5
4390892Full LengthBC015405ribosomal protein S5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001000  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001009 NP_001000 P46782 Ribosomal_S7

Related Sequences

 
mRNAGenPeptSwissProt
U14970 AAA85658 P46782
BC015405 AAH15405 P46782
BC018151 AAH18151 P46782
DQ891784 ABM82710  
DQ894968 ABM85894  
D28455 BAA05821  
AK223106 BAD96826 Q53G25
AK311938 BAG34879 P46782

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS5 NP_001000 M.musculus Rps5 20103 Gene Info NP_033121 99
A.gambiae AgaP_AGAP008329 1277655   XP_555129 89
D.melanogaster RpS5a 32700   NP_523382 89
C.elegans rps-5 178012   NP_502077 87
D.melanogaster RpS5b 41807   NP_650407 87
A.thaliana RPS5B 818304   NP_001031502 80
N.crassa NCU09475 3879378   XP_963230 80
A.thaliana RPS5A 820367   NP_187800 78
P.falciparum PF07_0088 2655132   XP_001349118 75
S.pombe rps502 2541712   NP_594212 74
S.pombe rps5 2542939   NP_594279 72
S.cerevisiae RPS5 853587   NP_012657 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)