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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. USH1G, Usher syndrome 1G (autosomal recessive)
Sequence ID:NM_173477
RefSeqGene ID:NG_007882
Entrez Gene ID:124590
Ensembl ID:ENSG00000182040

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
USHER SYNDROME, TYPE 1G 

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 72912175 - 72919351

NM_173477 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
119967291217572914170
199732147291554872916765
321535617291900472919350

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40010028Full LengthBC101096Usher syndrome 1G (autosomal recessive)
40010033Full LengthBC101097Usher syndrome 1G (autosomal recessive)
40010036Full LengthBC101098Usher syndrome 1G (autosomal recessive)
40010038Full LengthBC101099Usher syndrome 1G (autosomal recessive)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775748  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173477 NP_775748 Q495M9 Ank
SAM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC101096 AAI01097 Q495M9
BC101097 AAI01098 Q495M9
BC101098 AAI01099 Q495M9
BC101099 AAI01100 Q495M9
AK091243 BAC03619 Q495M9
AK289804 BAF82493 A8K189
AK296899 BAG59457 B4DL95

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens USH1G NP_775748 M.musculus Ush1g 16470 Gene Info NP_789817 96
R.norvegicus Ush1g 287819   NP_001099320 96
A.gambiae AgaP_AGAP007027 1270079   XP_308746 39
D.melanogaster Sans 36427   NP_788340 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)