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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LTB, lymphotoxin beta (TNF superfamily, member 3)
Sequence ID:NM_002341
NM_009588
Entrez Gene ID:4050
Ensembl ID:ENSG00000227507

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31548861 - 31551312

 Exon Info From UCSC:
NM_002341
NM_009588

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262211Full LengthBC069330lymphotoxin beta (TNF superfamily, member 3)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002332  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002341 NP_002332 Q5STB2
Q06643
TNF
NM_009588 NP_033666    

Related Sequences

 
mRNAGenPeptSwissProt
L11015 AAA36191 Q5STB2
Q06643
U79029 AAB37342 Q06643
U89922 AAC51769 Q06643
BC069330 AAH69330 Q5STB2
Q06643
BC093783 AAH93783 Q06643
AK312210 BAG35143 Q06643

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LTB NP_002332 R.norvegicus Ltb 361795   NP_997672 76
M.musculus Ltb 16994 Gene Info NP_032544 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)