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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. NOP56, NOP56 ribonucleoprotein homolog (yeast)
Sequence ID:NM_006392
RefSeqGene ID:NG_032136
Entrez Gene ID:10528
Ensembl ID:ENSG00000101361

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 2631580 - 2633624

 Exon Info From UCSC:
NM_006392

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8143794Full LengthBC104791NOP56 ribonucleoprotein homolog (yeast)
8143796Full LengthBC104793NOP56 ribonucleoprotein homolog (yeast)
4448930IncompleteBC018421NOP56 ribonucleoprotein homolog (yeast)
5177114IncompleteBC035369NOP56 ribonucleoprotein homolog (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006383  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006392 NP_006383 O00567 Nop
NOSIC
NOP5NT

Related Sequences

 
mRNAGenPeptSwissProt
BC004937 AAH04937 Q9BSN3
BC018421 AAH18421 A0PJ92
BC104791 AAI04792 O00567
BC104793 AAI04794 O00567
AK292721 BAF85410 A8K9K6
Y12065 CAA72789 O00567

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NOP56 NP_006383 R.norvegicus Nop56 362214   NP_001020903 92
M.musculus Nop56 67134 Gene Info NP_077155 91
A.gambiae AgaP_AGAP002063 1281050   XP_320984 64
D.melanogaster Nop56 42633   NP_651040 64
C.elegans K07C5.4 179442   NP_505660 59
A.thaliana AT3G12860 820468   NP_187892 56
S.pombe SPBC646.10c 2541087   NP_595368 54
A.thaliana NOP56 842063   NP_176007 54
S.cerevisiae NOP56 850894   NP_013298 53
N.crassa NCU06943 3874196   XP_958049 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)