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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PRPF4, PRP4 pre-mRNA processing factor 4 homolog (yeast)
Sequence ID:NM_001244926
NM_004697
Entrez Gene ID:9128
Ensembl ID:ENSG00000136875

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q31-q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 116037965 - 116054847


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2988225Full LengthBC001588PRP4 pre-mRNA processing factor 4 homolog (yeast)
3029831Full LengthBC007424PRP4 pre-mRNA processing factor 4 homolog (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004688  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001244926 NP_001231855    
NM_004697 NP_004688 O43172 WD40

Related Sequences

 
mRNAGenPeptSwissProt
U82756 AAC02261 O43172
AF016369 AAC51925 O43172
BC001588 AAH01588 O43172
BC007424 AAH07424 Q5T1M7
O43172
AY572489 AAS78572 Q5T1M7
EU176673 ABW03474  
EU176331 ABW03782  
AB209797 BAD93034 Q59EL4
AK313131 BAG35951 B2R7V4
CR457105 CAG33386 Q6IAP9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRPF4 NP_004688 M.musculus Prpf4 70052 Gene Info NP_081573 99
R.norvegicus Prpf4 298095   NP_001100129 99
A.gambiae AgaP_AGAP002144 1269414   XP_308051 57
D.melanogaster U4-U6-60K 39955   NP_648990 55
C.elegans prp-4 183250   NP_492363 46
A.thaliana LIS 818748   NP_181681 46
N.crassa NCU11251 5847683   XP_001728376 41
S.pombe SPAC227.12 2541477   NP_592966 39
A.thaliana AT2G05720 815121   NP_178635 39
S.cerevisiae PRP4 856307   NP_015504 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)