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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ASXL1, additional sex combs like 1 (Drosophila)
Sequence ID:NM_001164603
NM_015338
RefSeqGene ID:NG_027868
Entrez Gene ID:171023
Ensembl ID:ENSG00000171456

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 31017187 - 31027121

 Exon Info From UCSC:
NM_001164603
NM_015338

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021275Full LengthBC137278additional sex combs like 1 (Drosophila)
9021277Full LengthBC137280additional sex combs like 1 (Drosophila)
4537618IncompleteBC033284additional sex combs like 1 (Drosophila)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164603 NP_001158075    
NM_015338 NP_056153 Q8IXJ9  

Related Sequences

 
mRNAGenPeptSwissProt
BC033284 AAH33284 Q8IXJ9
BC064984 AAH64984 Q6P1M8
BC100280 AAI00281 Q498B9
BC137278 AAI37279 Q8IXJ9
BC137280 AAI37281 Q8IXJ9
AB023195 BAA76822 Q8IXJ9
AB084280 BAD00087 Q76L82
AK122923 BAG53800 B3KVI8
AL117518 CAB55975 Q8IXJ9
AL117647 CAB56029 Q8IXJ9
AJ438952 CAD27708 Q8IXJ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ASXL1 NP_056153 M.musculus Asxl1 228790 Gene Info NP_001035028 75
R.norvegicus RGD1561878 311553   XP_002729264 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)