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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HM13, histocompatibility (minor) 13
Sequence ID:NM_030789
NM_178580
NM_178581
NM_178582
Entrez Gene ID:81502
Ensembl ID:ENSG00000101294

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 30154005 - 30154652

 Exon Info From UCSC:
NM_030789
NM_178580
NM_178581
NM_178582

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961249Full LengthBC008938histocompatibility (minor) 13
2961249Full LengthBC008959histocompatibility (minor) 13
5245982Full LengthBC062595histocompatibility (minor) 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848696  NP_848695  NP_110416  NP_848697  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030789 NP_110416 Q8TCT9 Peptidase_A22B
NM_178580 NP_848695   Peptidase_A22B
NM_178581 NP_848696   Peptidase_A22B
NM_178582 NP_848697   Peptidase_A22B

Related Sequences

 
mRNAGenPeptSwissProt
BC008938 AAH08938 Q8TCT9
BC008959 AAH08959 Q8TCT9
BC062595 AAH62595 Q8TCT9
AF483215 AAM22076 Q8TCT9
AF515663 AAN77099 Q8TCT9
AY169310 AAO12535 Q8TCT9
AY169311 AAO12536 Q8TCT9
AY169312 AAO12537 Q8TCT9
AF172086 AAQ13609 Q8TCT9
DQ168450 ABA56163 Q8TCT9
DQ896206 ABM87205  
AK074686 BAC11138 Q8TCT9
AK075283 BAC11519 Q8TCT9
AK314410 BAG37032 Q8TCT9
AJ345029 CAC87790 Q8TCT9
AJ420895 CAD13132 Q8TCT9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HM13 NP_848696 M.musculus H13 14950 Gene Info NP_034506 96
R.norvegicus Hm13 311545   NP_001101259 96
D.melanogaster Spp 33227   NP_523444 65
A.gambiae AgaP_AGAP008838 1279805   XP_319582 64
A.thaliana SPP 814841   NP_565294 46
C.elegans imp-2 178013   NP_502079 45
S.pombe SPAC25B8.17 2542712   NP_594477 42
P.falciparum SPP 812125   XP_001348717 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)