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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPTAN1, spectrin, alpha, non-erythrocytic 1
Sequence ID:NM_001130438
NM_001195532
NM_003127
RefSeqGene ID:NG_027748
Entrez Gene ID:6709
Ensembl ID:ENSG00000197694

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 5 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 131314871 - 131395938

 Exon Info From UCSC:
NM_001130438
NM_003127

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5529391Full LengthBC053521spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
5211391IncompleteBC051801spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130438 NP_001123910    
NM_001195532 NP_001182461    
NM_003127 NP_003118 Q13813  

Related Sequences

 
mRNAGenPeptSwissProt
M18627 AAA51702 Q13813
J05243 AAA51790 Q13813
M24773 AAA52468 Q13813
M19725 AAA59904 Q14917
U83867 AAB41498 Q13813
U26396 AAB60364 Q13813
BC053521 AAH53521 Q13813
AB191262 BAD52438 Q13813
AB209860 BAD93097 Q13813
AK294753 BAG57892 B4DGT1
AK300386 BAG62120 B4DTV8
X86901 CAA60503 Q13813
AL110273 CAB53710 Q9UG16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPTAN1 NP_001123910 R.norvegicus Sptan1 64159   NP_741984 98
M.musculus Spna2 20740 Gene Info NP_001171138 98
A.gambiae AgaP_AGAP006686 1277275   XP_316724 67
D.melanogaster alpha-Spec 38231   NP_476739 66
C.elegans spc-1 180603   NP_508537 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta