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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRDM2, PR domain containing 2, with ZNF domain
Sequence ID:NM_001007257
NM_001135610
NM_012231
NM_015866
Entrez Gene ID:7799
Ensembl ID:ENSG00000116731

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 14075899 - 14151566

 Exon Info From UCSC:
NM_001007257
NM_001135610
NM_012231
NM_015866

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069108Full LengthBC172414PR domain containing 2, with ZNF domain

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007258  NP_036363  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001007257 NP_001007258 Q5THJ1   zf-C2H2
NM_001135610 NP_001129082      
NM_012231 NP_036363 Q13029 EC 2.1.1.43 zf-C2H2
SET
NM_015866 NP_056950      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U23736 AAA87023 Q13029 EC 2.1.1.43
U17838 AAC50820 Q13029 EC 2.1.1.43
BC172414 AAI72414    
D45132 BAA08110 Q13029 EC 2.1.1.43
AB208877 BAD92114 Q59H82  
AK293725 BAG57154 B4DEP3  
AK300441 BAG62164 B4DU02  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRDM2 NP_036363 M.musculus Prdm2 110593 Gene Info NP_001074824 85
R.norvegicus Prdm2 313678   NP_001071116 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)