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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GTF3C1, General transcription factor IIIC, polypeptide 1, alpha 220kDa
Sequence ID:NM_001520
Entrez Gene ID:2975
Ensembl ID:ENSG00000077235

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 27471933 - 27500474

 Exon Info From UCSC:
NM_001520

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021226Full LengthBC137229general transcription factor IIIC, polypeptide 1, alpha 220kDa
5113502IncompleteBC044857general transcription factor IIIC, polypeptide 1, alpha 220kDa
6138423IncompleteBC052642general transcription factor IIIC, polypeptide 1, alpha 220kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001520 NP_001511 Q12789  

Related Sequences

 
mRNAGenPeptSwissProt
U02619 AAA17985 Q12789
U06485 AAA85638 Q12789
BC044857 AAH44857 Q12789
BC052642 AAH52642 Q7Z7H4
BC137229 AAI37230 Q12789
CR627430 CAH10517 Q6AHZ7
BX648143 CAH10771 Q6AWA4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GTF3C1 NP_001511 R.norvegicus Gtf3c1 171063   NP_598225 80
M.musculus Gtf3c1 233863 Gene Info NP_997122 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta