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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. RAE1, RAE1 RNA export 1 homolog (S. pombe)
Sequence ID:NM_001015885
Entrez Gene ID:8480
Ensembl ID:ENSG00000101146

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 55926585 - 55953489

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6501538Full LengthBC103754RAE1 RNA export 1 homolog (S. pombe)
40032941Full LengthBC106923RAE1 RNA export 1 homolog (S. pombe)
40032942Full LengthBC106924RAE1 RNA export 1 homolog (S. pombe)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003601  NP_001015885  

Protein Infomation

NM_001015885 NP_001015885 P78406 WD40
NM_003610 NP_003601 P78406 WD40

Related Sequences

U84720 AAC28126 P78406
BC103754 AAI03755 P78406
BC106923 AAI06924 P78406
BC106924 AAI06925 P78406
AY349350 AAR04856 P78406
AY336091 AAR24621 Q5J8M4
AK292247 BAF84936 P78406

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens RAE1 NP_001015885 M.musculus Rae1 66679 Gene Info NP_780321 99
R.norvegicus Rae1 362281   NP_001028880 98
A.gambiae AgaP_AGAP012373 1280339   XP_320184 70
D.melanogaster Rae1 37467   NP_611597 70
A.thaliana AT1G80670 844406   NP_178182 55
C.elegans npp-17 172864   NP_492650 52
S.pombe rae1 2539741   NP_596784 50
S.cerevisiae GLE2 856844   NP_011033 44
N.crassa NCU04288 3877232   XP_961078 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)