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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TAPBP, TAP binding protein (tapasin)
Sequence ID:NM_003190
NM_172208
NM_172209
RefSeqGene ID:NG_009876
Entrez Gene ID:6892
Ensembl ID:ENSG00000231925

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
BARE LYMPHOCYTE SYNDROME, TYPE ITAP1
TAP2

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 33269501 - 33281831

 Exon Info From UCSC:
NM_003190
NM_172208
NM_172209

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6572933Full LengthBC080574TAP binding protein (tapasin)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003190 NP_003181    
NM_172208 NP_757345    
NM_172209 NP_757346    

Related Sequences

 
mRNAGenPeptSwissProt
AF029750 AAB82949 O15533
AF009510 AAC20076 O15533
AF067286 AAD32924 O15533
AF314222 AAG33061 O15533
BC064966 AAH64966 Q6P1N7
BC080574 AAH80574 O15533
EU693375 ACD68200 O15533
HQ447577 ADQ32063  
AB010639 BAA28757 O15533
Y13582 CAA73909 O15533

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TAPBP NP_003181 R.norvegicus Tapbp 25217   NP_149089 76
M.musculus Tapbp 21356 Gene Info NP_001020484 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)