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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LRRC59, leucine rich repeat containing 59
Sequence ID:NM_018509
Entrez Gene ID:55379
Ensembl ID:ENSG00000108829

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 48458597 - 48469781

NM_018509 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1920214845859348460595
202221954846247848462651
219622684846542048465492
226923734846975848469862
237425324847009948470257
253325924847228948472348
259329334847457348474913

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3907072Full LengthBC017168leucine rich repeat containing 59
4127952Full LengthBC052279leucine rich repeat containing 59

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060979  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018509 NP_060979 Q96AG4 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
AF119857 AAF69611 Q96AG4
BC017168 AAH17168 Q96AG4
BC052279 AAH52279 Q96AG4
DQ892375 ABM83301  
DQ895589 ABM86515  
AK316593 BAG38180 B2RE83

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LRRC59 NP_060979 M.musculus Lrrc59 98238 Gene Info NP_598568 95
R.norvegicus Lrrc59 287633   NP_001008281 94
A.gambiae AgaP_AGAP007632 1269595   XP_308238 43
C.elegans F56A8.3 176740   NP_499730 40
D.melanogaster CG3408 39107   NP_648328 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)