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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPN2, ribophorin II
Sequence ID:NM_001135771
NM_002951
Entrez Gene ID:6185
Ensembl ID:ENSG00000118705

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q12-q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 35807563 - 35869810

 Exon Info From UCSC:
NM_001135771
NM_002951

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3546673Full LengthBC003560ribophorin II
3640766Full LengthBC020222ribophorin II
2961244IncompleteBC002380ribophorin II
3532152IncompleteBC013028ribophorin II

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002942  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001135771 NP_001129243      
NM_002951 NP_002942 P04844 EC 2.4.1.119 Ribophorin_II

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC002380 AAH02380 P04844 EC 2.4.1.119
BC003560 AAH03560 P04844 EC 2.4.1.119
BC013028 AAH13028 P04844 EC 2.4.1.119
BC020222 AAH20222 P04844 EC 2.4.1.119
DQ892347 ABM83273    
DQ895552 ABM86478    
AK315801 BAG38143 B2RE46  
AK096243 BAG53237 P04844 EC 2.4.1.119
AK296126 BAG58872 B4DJL0  
Y00282 CAA68393 P04844 EC 2.4.1.119
CR456899 CAG33180 P04844 EC 2.4.1.119

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPN2 NP_002942 R.norvegicus Rpn2 64701   NP_113886 93
M.musculus Rpn2 20014 Gene Info NP_062616 92
C.elegans M01A10.3 172208   NP_491624 37
D.melanogaster CG6370 37029   NP_611265 35
A.gambiae AgaP_AGAP007638 1269588   XP_308231 33
A.thaliana HAP6 827863   NP_001190785 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)